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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
33
DNase-seq
6
total RNA-seq
2
small RNA-seq
1
pCHi-C
Assay category
81
DNA binding
33
DNA accessibility
8
Transcription
Target of assay
51
transcription factor
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
41
June, 2019
27
December, 2018
15
January, 2019
13
August, 2017
12
November, 2018
6
May, 2019
4
July, 2019
3
March, 2020
2
February, 2020
Available data
123
bigWig
117
bam
114
bed narrowPeak
101
bigBed narrowPeak
62
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
123
Homo sapiens
Biosample type
58
tissue
54
cell line
11
primary cell
Organ
631
pancreas
615
liver
553
connective tissue
414
adipose tissue
359
heart
307
epithelium
229
brain
207
kidney
201
vasculature
197
blood vessel
132
artery
99
limb
69
musculature of body
66
bone element
54
blood
54
bodily fluid
38
eye
32
nerve
28
embryo
18
ureter
15
spleen
13
vein
8
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
stomach
1
thymus
1
urinary bladder
Project
123
AMP
Genome assembly (visualization)
120
hg19
106
GRCh38
Lab
123
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
inconsistent control
organ_slims!
stomach
BIOSAMPLE
ASSAY
123 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
pCHi-C
tissue
muscle of leg
6
13
muscle of arm
17
skeletal muscle tissue
13
1
1
psoas muscle
2
1
forelimb muscle
1
+ See 3 more…
cell line
GM12878
54
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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