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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
60
total RNA-seq
46
ATAC-seq
6
DNase-seq
6
single cell RNA-seq
1
pCHi-C
Assay category
66
Transcription
61
DNA binding
52
DNA accessibility
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
64
February, 2021
39
May, 2019
35
February, 2023
21
October, 2019
6
August, 2021
6
July, 2019
4
June, 2019
3
February, 2020
2
March, 2020
Available data
155
bam
128
bigWig
113
bed narrowPeak
67
tsv
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
180
Homo sapiens
Biosample type
114
tissue
64
cell line
2
primary cell
Organ
631
pancreas
615
liver
553
connective tissue
414
adipose tissue
359
heart
epithelium
229
brain
207
kidney
201
vasculature
197
blood vessel
132
artery
99
limb
69
musculature of body
66
bone element
54
blood
54
bodily fluid
38
eye
32
nerve
28
embryo
18
ureter
15
spleen
13
vein
8
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
180
AMP
Genome assembly (visualization)
170
GRCh38
135
hg19
Lab
180
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
180 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
3
1
36
2
tibial artery
18
1
1
2
aorta
11
1
4
1
ascending aorta
13
2
1
thoracic aorta
12
2
1
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cell line
smooth muscle cell of the coronary artery
4
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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