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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1232ChIP-seq
  • 278ATAC-seq
  • 208DNase-seq
  • 5FAIRE-seq
Assay category
  • 1232DNA binding
  • 491DNA accessibility
Target of assay
  • 808histone modification
  • 807histone
  • 419transcription factor
  • 408narrow histone mark
  • 398broad histone mark
  • 99RNA binding protein
  • 88recombinant protein
  • 31chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 262November, 2017
  • 210June, 2019
  • 189October, 2019
  • 133May, 2021
  • 119August, 2017
  • 106August, 2021
  • 97May, 2019
  • 71November, 2018
  • 70December, 2017
  • 65April, 2019
  • 65February, 2023
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 27May, 2020
  • 23February, 2021
  • 21January, 2019
  • 12October, 2017
  • 7July, 2019
  • 5September, 2017
  • 3March, 2020
  • 2November, 2020
Available data
  • 3255bam
  • 3056bigWig
  • 1723bed narrowPeak
  • 1591tsv
  • 1216fastq
  • 978bigBed narrowPeak
  • 382tagAlign
  • 270bed bed3+
  • 269bed broadPeak
  • 232bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1717Homo sapiens
Biosample type
  • 982tissue
  • 351cell line
  • 272primary cell
  • 116in vitro differentiated cells
  • 2stem cell
Organ
  • 386liver
  • 203brain
  • 200pancreas
  • 191heart
  • 183kidney
  • 137epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8embryo
  • 8skeleton
  • 1pituitary gland
Project
  • 1635AMP
  • 88T1D
Genome assembly (visualization)
  • 1547GRCh38
  • 1504hg19
Lab
  • 1449AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 63inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 48missing controlled_by
Audit category:
  • 42inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

1723 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver80202
kidney2064131
islet of Langerhans203711
coronary artery3362
left cardiac atrium401
cell line
HepG22541
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
endothelial cell of umbilical vein1021
pancreatic acinar cell85
in vitro differentiated cells
adipocyte4211
neural progenitor cell1310
hepatocyte14
pancreatic endoderm6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
stem cell
hESC2
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