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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93ChIP-seq
  • 1DNase-seq
Assay category
  • 93DNA binding
  • 1DNA accessibility
Target of assay
  • 50transcription factor
  • 43histone
  • 43histone modification
  • 22broad histone mark
  • 21narrow histone mark
  • 6RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 51November, 2017
  • 23August, 2017
  • 16February, 2018
  • 2December, 2017
  • 2November, 2018
Available data
  • 142fastq
  • 137bam
  • 113bigWig
  • 94bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 94Homo sapiens
Biosample type
  • 53cell line
  • 23primary cell
  • 16in vitro differentiated cells
  • 2tissue
Organ
  • 55liver
  • 14epithelium
  • 14pancreas
  • 6embryo
Project
  • 94AMP
Genome assembly (visualization)
  • 94hg19
  • 85GRCh38
Lab
  • 94AMP-T2D consortium
Audit category:
  • 12inconsistent control read length
BIOSAMPLE
ASSAY

94 results

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ChIP-seq
DNase-seq
cell line
HepG253
primary cell
skeletal muscle myoblast81
pancreatic alpha cell7
pancreatic beta cell7
in vitro differentiated cells
pancreatic endoderm6
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
tissue
liver2
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