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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 262ChIP-seq
  • 17ATAC-seq
  • 4DNase-seq
Assay category
  • 262DNA binding
  • 21DNA accessibility
Target of assay
  • 204transcription factor
  • 81recombinant protein
  • 56histone
  • 56histone modification
  • 34broad histone mark
  • 24RNA binding protein
  • 22narrow histone mark
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 126November, 2017
  • 46September, 2018
  • 45November, 2018
  • 27December, 2017
  • 23August, 2017
  • 6October, 2017
  • 4January, 2019
  • 3December, 2018
  • 3October, 2018
Available data
  • 562fastq
  • 560bam
  • 482bigWig
  • 283bed narrowPeak
  • 244bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 278Homo sapiens
Biosample type
  • 169cell line
  • 64tissue
  • 48primary cell
  • 2in vitro differentiated cells
Organ
  • 196liver
  • 61pancreas
  • 35epithelium
  • 12blood
  • 12bodily fluid
  • 5connective tissue
  • 4brain
  • 3adipose tissue
  • 3spleen
Project
  • 283AMP
Genome assembly (visualization)
  • 282GRCh38
  • 280hg19
Lab
  • 283AMP-T2D consortium
Audit category:
  • 27inconsistent control
Audit category:
  • 32missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

283 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2157
GM1287812
tissue
liver381
pancreas11
body of pancreas13
brain31
spleen3
primary cell
pancreatic ductal cell134
pancreatic acinar cell83
pancreatic endocrine cell11
pancreatic beta cell4
pancreatic alpha cell3
in vitro differentiated cells
adipocyte11
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