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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
262
ChIP-seq
17
ATAC-seq
4
DNase-seq
Assay category
262
DNA binding
21
DNA accessibility
Target of assay
204
transcription factor
81
recombinant protein
56
histone
56
histone modification
34
broad histone mark
24
RNA binding protein
22
narrow histone mark
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
126
November, 2017
46
September, 2018
45
November, 2018
27
December, 2017
23
August, 2017
6
October, 2017
4
January, 2019
3
December, 2018
3
October, 2018
Available data
562
fastq
560
bam
482
bigWig
283
bed narrowPeak
244
bigBed narrowPeak
163
tsv
17
bed broadPeak
14
bed bed3+
11
tagAlign
10
bigBed broadPeak
Organism
278
Homo sapiens
Biosample type
169
cell line
64
tissue
48
primary cell
2
in vitro differentiated cells
Organ
196
liver
61
pancreas
35
epithelium
12
blood
12
bodily fluid
5
connective tissue
4
brain
3
adipose tissue
3
spleen
Project
283
AMP
Genome assembly (visualization)
282
GRCh38
280
hg19
Lab
283
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
32
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
283 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
157
GM12878
12
tissue
liver
38
1
pancreas
11
body of pancreas
1
3
brain
3
1
spleen
3
+ See 2 more…
primary cell
pancreatic ductal cell
13
4
pancreatic acinar cell
8
3
pancreatic endocrine cell
11
pancreatic beta cell
4
pancreatic alpha cell
3
+ See 1 more…
in vitro differentiated cells
adipocyte
1
1
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