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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
2
DNase-seq
Assay category
109
DNA binding
2
DNA accessibility
Target of assay
56
histone
56
histone modification
52
transcription factor
34
RNA binding protein
30
broad histone mark
26
narrow histone mark
20
chromatin remodeller
Date released
41
December, 2017
20
November, 2018
18
November, 2017
17
October, 2018
11
January, 2019
2
August, 2017
2
December, 2018
Available data
187
fastq
178
bam
160
bigWig
111
bed narrowPeak
88
bigBed narrowPeak
34
tsv
17
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bigBed broadPeak
2
csv
1
zippedFastqFolder
Organism
111
Homo sapiens
Biosample type
43
cell line
34
in vitro differentiated cells
32
tissue
2
stem cell
Organ
55
liver
18
pancreas
16
epithelium
9
blood
9
bodily fluid
8
embryo
6
spleen
1
brain
Project
111
AMP
Genome assembly (visualization)
110
hg19
109
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
cell line
HepG2
34
GM12878
9
in vitro differentiated cells
hepatocyte
14
pancreatic endoderm
6
Posterior foregut
4
definitive endodermal cell
4
primitive gut cell
4
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tissue
body of pancreas
17
spleen
6
right lobe of liver
5
liver
1
1
brain
1
+ See 1 more…
stem cell
hESC
2
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