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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 109ChIP-seq
  • 2DNase-seq
Assay category
  • 109DNA binding
  • 2DNA accessibility
Target of assay
  • 56histone
  • 56histone modification
  • 52transcription factor
  • 34RNA binding protein
  • 30broad histone mark
  • 26narrow histone mark
  • 20chromatin remodeller
Date released
  • 41December, 2017
  • 20November, 2018
  • 18November, 2017
  • 17October, 2018
  • 11January, 2019
  • 2August, 2017
  • 2December, 2018
Available data
  • 187fastq
  • 178bam
  • 160bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 111Homo sapiens
Biosample type
  • 43cell line
  • 34in vitro differentiated cells
  • 32tissue
  • 2stem cell
Organ
  • 55liver
  • 18pancreas
  • 16epithelium
  • 9blood
  • 9bodily fluid
  • 8embryo
  • 6spleen
  • 1brain
Project
  • 111AMP
Genome assembly (visualization)
  • 110hg19
  • 109GRCh38
Lab
  • 111AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 7missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

111 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG234
GM128789
in vitro differentiated cells
hepatocyte14
pancreatic endoderm6
Posterior foregut4
definitive endodermal cell4
primitive gut cell4
tissue
body of pancreas17
spleen6
right lobe of liver5
liver11
brain1
stem cell
hESC2
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