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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1136ChIP-seq
  • 278ATAC-seq
  • 198DNase-seq
  • 5FAIRE-seq
Assay category
  • 1136DNA binding
  • 481DNA accessibility
Target of assay
  • 761histone modification
  • 760histone
  • 385narrow histone mark
  • 374broad histone mark
  • 370transcription factor
  • 88recombinant protein
  • 83RNA binding protein
  • 19chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 215November, 2017
  • 210June, 2019
  • 189October, 2019
  • 133May, 2021
  • 106August, 2021
  • 97May, 2019
  • 94August, 2017
  • 65April, 2019
  • 65February, 2023
  • 57November, 2018
  • 54December, 2017
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 27May, 2020
  • 23February, 2021
  • 21January, 2019
  • 7July, 2019
  • 6October, 2017
  • 5September, 2017
  • 3March, 2020
  • 2February, 2018
  • 2November, 2020
Available data
  • 3134bam
  • 2954bigWig
  • 1617bed narrowPeak
  • 1600tsv
  • 1094fastq
  • 894bigBed narrowPeak
  • 359tagAlign
  • 236bed bed3+
  • 229bed broadPeak
  • 201bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1617Homo sapiens
Biosample type
  • 945tissue
  • 305cell line
  • 264primary cell
  • 102in vitro differentiated cells
  • 1stem cell
Organ
  • 335liver
  • 191heart
  • 189brain
  • 183kidney
  • 183pancreas
  • 135epithelium
  • 129vasculature
  • 127blood vessel
  • 92limb
  • 74artery
  • 72connective tissue
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 13spleen
  • 13vein
  • 11adipose tissue
  • 8bone element
  • 8skeleton
  • 2embryo
  • 1pituitary gland
Project
  • 1529AMP
  • 88T1D
Genome assembly (visualization)
  • 1450GRCh38
  • 1398hg19
Lab
  • 1343AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 61inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 36missing controlled_by
Audit category:
  • 25inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

1617 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney2064131
liver7820
islet of Langerhans93711
coronary artery3362
left cardiac atrium401
cell line
HepG22081
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
endothelial cell of umbilical vein1021
pancreatic acinar cell85
in vitro differentiated cells
adipocyte421
neural progenitor cell1310
hepatocyte14
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiomyocytes3
stem cell
hESC1
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