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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1242ChIP-seq
  • 270ATAC-seq
  • 209DNase-seq
  • 4FAIRE-seq
Assay category
  • 1242DNA binding
  • 483DNA accessibility
Target of assay
  • 836histone modification
  • 835histone
  • 426narrow histone mark
  • 408broad histone mark
  • 401transcription factor
  • 104RNA binding protein
  • 76recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 287November, 2017
  • 210June, 2019
  • 189October, 2019
  • 133May, 2021
  • 126August, 2017
  • 106August, 2021
  • 97May, 2019
  • 68November, 2018
  • 65April, 2019
  • 65February, 2023
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 34December, 2017
  • 30December, 2018
  • 27May, 2020
  • 23February, 2021
  • 19January, 2019
  • 16February, 2018
  • 12October, 2017
  • 7July, 2019
  • 3March, 2020
  • 2November, 2020
Available data
  • 3248bam
  • 3059bigWig
  • 1725bed narrowPeak
  • 1595tsv
  • 1192fastq
  • 966bigBed narrowPeak
  • 398tagAlign
  • 317bed broadPeak
  • 281bigBed broadPeak
  • 262bed bed3+
  • 161txt
  • 113zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1719Homo sapiens
Biosample type
  • 942tissue
  • 376cell line
  • 287primary cell
  • 120in vitro differentiated cells
Organ
  • 379liver
  • 203brain
  • 200pancreas
  • 191heart
  • 183kidney
  • 143epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 74artery
  • 72connective tissue
  • 60musculature of body
  • 52blood
  • 52bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 11embryo
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1637AMP
  • 88T1D
Genome assembly (visualization)
  • 1541GRCh38
  • 1506hg19
Lab
  • 1451AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 63inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 48missing controlled_by
Audit category:
  • 35inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 50
BIOSAMPLE
ASSAY

1725 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney2064131
liver46202
islet of Langerhans193711
coronary artery3362
left cardiac atrium401
cell line
HepG22811
GM1287852
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
in vitro differentiated cells
adipocyte3911
neural progenitor cell1310
hepatocyte14
pancreatic endoderm9
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
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