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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1203ChIP-seq
  • 230ATAC-seq
  • 199DNase-seq
  • 5FAIRE-seq
Assay category
  • 1203DNA binding
  • 434DNA accessibility
Target of assay
  • 841histone
  • 841histone modification
  • 423narrow histone mark
  • 417broad histone mark
  • 360transcription factor
  • 88recombinant protein
  • 84RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 273November, 2017
  • 210June, 2019
  • 189October, 2019
  • 133May, 2021
  • 125August, 2017
  • 106August, 2021
  • 97May, 2019
  • 70December, 2017
  • 65April, 2019
  • 65February, 2023
  • 44November, 2018
  • 40May, 2024
  • 37November, 2019
  • 32October, 2018
  • 32September, 2018
  • 27May, 2020
  • 23February, 2021
  • 20May, 2022
  • 16February, 2018
  • 13January, 2019
  • 7July, 2019
  • 6October, 2017
  • 3March, 2020
  • 2December, 2018
  • 2November, 2020
Available data
  • 3019bam
  • 2851bigWig
  • 1637bed narrowPeak
  • 1454tsv
  • 903fastq
  • 895bigBed narrowPeak
  • 398tagAlign
  • 310bed broadPeak
  • 275bigBed broadPeak
  • 265bed bed3+
  • 155txt
  • 64xls
  • 31bed bedMethyl
  • 31bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 18zippedFastqFolder
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1631Homo sapiens
Biosample type
  • 920tissue
  • 313cell line
  • 271primary cell
  • 131in vitro differentiated cells
  • 2stem cell
Organ
  • 378liver
  • 202brain
  • 191heart
  • 183kidney
  • 160pancreas
  • 133vasculature
  • 129blood vessel
  • 129epithelium
  • 92limb
  • 74artery
  • 66connective tissue
  • 60musculature of body
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 13vein
  • 11blood
  • 11bodily fluid
  • 8bone element
  • 8skeleton
  • 6spleen
  • 5adipose tissue
  • 1pituitary gland
Project
  • 1549AMP
  • 88T1D
Genome assembly (visualization)
  • 1473GRCh38
  • 1418hg19
Lab
  • 1381AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 63inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 41missing controlled_by
Audit category:
  • 46inconsistent control read length
  • 2inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

1637 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney2064131
liver7320
coronary artery3362
islet of Langerhans201911
left cardiac atrium401
cell line
HepG22591
EndoC_BH1131
smooth muscle cell of the coronary artery48
GM1287811
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
skeletal muscle myoblast131
endothelial cell of umbilical vein1021
pancreatic ductal cell13
in vitro differentiated cells
adipocyte421
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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