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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 807ChIP-seq
  • 278ATAC-seq
  • 206DNase-seq
  • 3FAIRE-seq
Assay category
  • 807DNA binding
  • 487DNA accessibility
Target of assay
  • 648histone modification
  • 647histone
  • 335narrow histone mark
  • 312broad histone mark
  • 156transcription factor
  • 40RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 210June, 2019
  • 189October, 2019
  • 133May, 2021
  • 106August, 2021
  • 97May, 2019
  • 97November, 2017
  • 65April, 2019
  • 65February, 2023
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 36August, 2017
  • 29November, 2018
  • 28December, 2018
  • 27May, 2020
  • 27October, 2018
  • 23February, 2021
  • 14September, 2018
  • 8January, 2019
  • 7July, 2019
  • 6October, 2017
  • 5September, 2017
  • 3March, 2020
  • 2December, 2017
  • 2November, 2020
Available data
  • 2590bam
  • 2477bigWig
  • 1502tsv
  • 1294bed narrowPeak
  • 660bigBed narrowPeak
  • 450fastq
  • 359tagAlign
  • 234bed broadPeak
  • 222bed bed3+
  • 206bigBed broadPeak
  • 161txt
  • 134zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 1294Homo sapiens
Biosample type
  • 879tissue
  • 228primary cell
  • 147cell line
  • 40in vitro differentiated cells
Organ
  • 191heart
  • 190brain
  • 183kidney
  • 135liver
  • 129vasculature
  • 127blood vessel
  • 123pancreas
  • 96epithelium
  • 92limb
  • 74artery
  • 60musculature of body
  • 43blood
  • 43bodily fluid
  • 33eye
  • 32connective tissue
  • 27nerve
  • 18ureter
  • 13vein
  • 12adipose tissue
  • 8bone element
  • 8skeleton
  • 8spleen
  • 1pituitary gland
Project
  • 1206AMP
  • 88T1D
Genome assembly (visualization)
  • 1143GRCh38
  • 1079hg19
Lab
  • 1020AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 61inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

1294 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney2064131
liver41202
islet of Langerhans837
coronary artery3362
left cardiac atrium401
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
endothelial cell of umbilical vein1021
epithelial cell of proximal tubule81
pancreatic beta cell7
cell line
HepG2611
GM1287843
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
in vitro differentiated cells
neural progenitor cell1310
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiomyocytes3
adipocyte11
pancreatic PP cell2
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