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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 122ChIP-seq
  • 48ATAC-seq
  • 10DNase-seq
Assay category
  • 122DNA binding
  • 58DNA accessibility
Target of assay
  • 109transcription factor
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 40November, 2017
  • 29November, 2018
  • 28December, 2018
  • 18May, 2022
  • 17August, 2017
  • 14September, 2018
  • 13October, 2018
  • 8January, 2019
  • 6October, 2017
  • 5September, 2017
  • 2December, 2017
Available data
  • 455fastq
  • 373bam
  • 318bigWig
  • 180bed narrowPeak
  • 147bigBed narrowPeak
  • 146tsv
  • 135zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 180Homo sapiens
Biosample type
  • 91cell line
  • 64tissue
  • 24primary cell
  • 1in vitro differentiated cells
Organ
  • 63liver
  • 54pancreas
  • 43blood
  • 43bodily fluid
  • 22epithelium
  • 9connective tissue
  • 8adipose tissue
  • 8spleen
  • 1brain
Project
  • 180AMP
Genome assembly (visualization)
  • 180hg19
  • 159GRCh38
Lab
  • 162AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

180 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG248
GM1287843
tissue
islet of Langerhans18
body of pancreas842
liver92
spleen611
omental fat pad311
primary cell
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
skeletal muscle myoblast11
in vitro differentiated cells
adipocyte1
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