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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
48
ATAC-seq
10
DNase-seq
Assay category
122
DNA binding
58
DNA accessibility
Target of assay
109
transcription factor
21
RNA binding protein
11
chromatin remodeller
10
histone modification
9
histone
6
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Date released
40
November, 2017
29
November, 2018
28
December, 2018
18
May, 2022
17
August, 2017
14
September, 2018
13
October, 2018
8
January, 2019
6
October, 2017
5
September, 2017
2
December, 2017
Available data
455
fastq
373
bam
318
bigWig
180
bed narrowPeak
147
bigBed narrowPeak
146
tsv
135
zippedFastqFolder
12
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
6
txt
5
bed bedMethyl
5
bigBed bedMethyl
2
csv
1
bedpe bed3+
Organism
180
Homo sapiens
Biosample type
91
cell line
64
tissue
24
primary cell
1
in vitro differentiated cells
Organ
63
liver
54
pancreas
43
blood
43
bodily fluid
22
epithelium
9
connective tissue
8
adipose tissue
8
spleen
1
brain
Project
180
AMP
Genome assembly (visualization)
180
hg19
159
GRCh38
Lab
162
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
180 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
48
GM12878
43
tissue
islet of Langerhans
18
body of pancreas
8
4
2
liver
9
2
spleen
6
1
1
omental fat pad
3
1
1
+ See 3 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
skeletal muscle myoblast
1
1
in vitro differentiated cells
adipocyte
1
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