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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 518ChIP-seq
  • 3DNase-seq
  • 2FAIRE-seq
Assay category
  • 518DNA binding
  • 5DNA accessibility
Target of assay
  • 313transcription factor
  • 203histone
  • 203histone modification
  • 108broad histone mark
  • 94narrow histone mark
  • 81recombinant protein
  • 65RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 216November, 2017
  • 106August, 2017
  • 70December, 2017
  • 44November, 2018
  • 32September, 2018
  • 18October, 2018
  • 16February, 2018
  • 13January, 2019
  • 6October, 2017
  • 2December, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 517Homo sapiens
Biosample type
  • 257cell line
  • 105tissue
  • 92in vitro differentiated cells
  • 67primary cell
  • 2stem cell
Organ
  • 306liver
  • 91pancreas
  • 55epithelium
  • 43connective tissue
  • 14embryo
  • 13brain
  • 11blood
  • 11bodily fluid
  • 6spleen
  • 4vasculature
  • 2blood vessel
  • 1adipose tissue
Project
  • 523AMP
Genome assembly (visualization)
  • 519hg19
  • 489GRCh38
Lab
  • 523AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 2inconsistent ontology term
Audit category:
  • 42missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

523 results

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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2246
GM1287811
tissue
liver41
body of pancreas17
islet of Langerhans1211
pancreas131
brain61
in vitro differentiated cells
adipocyte42
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
primitive gut cell6
primary cell
skeletal muscle myoblast141
pancreatic ductal cell13
pancreatic endocrine cell11
pancreatic acinar cell8
pancreatic alpha cell7
stem cell
hESC2
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