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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
55
DNA binding
28
DNA accessibility
Target of assay
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
27
May, 2020
20
May, 2022
9
November, 2017
7
August, 2017
7
December, 2017
4
August, 2021
3
November, 2018
3
October, 2019
2
June, 2019
1
February, 2021
Available data
326
bam
259
bigWig
174
tsv
113
fastq
83
bed narrowPeak
68
tagAlign
23
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
83
Homo sapiens
Biosample type
61
tissue
12
cell line
5
in vitro differentiated cells
5
primary cell
Organ
159
kidney
139
brain
133
pancreas
117
heart
102
epithelium
83
liver
83
vasculature
80
blood vessel
58
limb
55
artery
44
musculature of body
36
connective tissue
32
eye
18
ureter
11
nerve
8
adipose tissue
8
bone element
8
skeleton
8
vein
7
embryo
4
spleen
3
blood
3
bodily fluid
1
pituitary gland
Project
83
AMP
Genome assembly (visualization)
83
hg19
53
GRCh38
Lab
61
AMP-T2D consortium
20
Karen Mohlke, UNC
2
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
liver
35
20
2
right lobe of liver
2
1
1
cell line
HepG2
11
1
in vitro differentiated cells
hepatocyte
5
primary cell
hepatocyte
2
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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