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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
414
ChIP-seq
37
DNase-seq
28
ATAC-seq
Assay category
414
DNA binding
65
DNA accessibility
Target of assay
329
transcription factor
82
histone modification
81
histone
81
recombinant protein
56
RNA binding protein
51
narrow histone mark
30
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
October, 2019
51
November, 2018
50
December, 2017
34
June, 2019
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
7
February, 2021
6
May, 2019
Available data
720
bam
655
bigWig
479
bed narrowPeak
465
fastq
396
bigBed narrowPeak
176
tsv
95
bed broadPeak
95
bigBed broadPeak
86
tagAlign
45
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
479
Homo sapiens
Biosample type
308
cell line
152
tissue
14
in vitro differentiated cells
5
primary cell
Organ
435
liver
207
pancreas
186
heart
167
kidney
130
epithelium
128
brain
99
vasculature
95
blood vessel
73
connective tissue
60
musculature of body
54
blood
54
bodily fluid
53
artery
44
limb
33
eye
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
Project
479
AMP
Genome assembly (visualization)
475
hg19
404
GRCh38
Lab
445
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
lab.title!
Struan F.A. Grant, CHOP
month_released!
October, 2019
BIOSAMPLE
ASSAY
479 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
307
1
tissue
liver
77
2
20
muscle of leg
6
13
muscle of arm
17
right lobe of liver
7
1
1
distal epiphysis of femur
1
+ See 7 more…
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
hepatic stellate cell
1
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