Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1193ChIP-seq
  • 273ATAC-seq
  • 205DNase-seq
  • 4FAIRE-seq
Assay category
  • 1193DNA binding
  • 482DNA accessibility
Target of assay
  • 743histone
  • 743histone modification
  • 445transcription factor
  • 379narrow histone mark
  • 364broad histone mark
  • 98RNA binding protein
  • 88recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 313November, 2017
  • 210June, 2019
  • 189October, 2019
  • August, 2017
  • 133May, 2021
  • 106August, 2021
  • 97May, 2019
  • 73November, 2018
  • 72December, 2017
  • 65April, 2019
  • 65February, 2023
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 27May, 2020
  • 23February, 2021
  • 21January, 2019
  • 16February, 2018
  • 12October, 2017
  • 7July, 2019
  • 5September, 2017
  • 3March, 2020
  • 2November, 2020
Available data
  • 3110bam
  • 2897bigWig
  • 1675bed narrowPeak
  • 1511tsv
  • 1071fastq
  • 1000bigBed narrowPeak
  • 313tagAlign
  • 281bed broadPeak
  • 270bigBed broadPeak
  • 240bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1675Homo sapiens
Biosample type
  • 918tissue
  • 404cell line
  • 262primary cell
  • 89in vitro differentiated cells
  • 2stem cell
Organ
  • 423liver
  • 203brain
  • 191heart
  • 183kidney
  • 165pancreas
  • 134epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 74artery
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 33eye
  • 29connective tissue
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13vein
  • 10adipose tissue
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1587AMP
  • 88T1D
Genome assembly (visualization)
  • 1514GRCh38
  • 1456hg19
Lab
  • 1401AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 63inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 47missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

1675 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney2064131
liver65202
coronary artery3362
left cardiac atrium401
islet of Langerhans237
cell line
HepG23071
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
endothelial cell of umbilical vein1021
pancreatic acinar cell84
in vitro differentiated cells
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
primitive gut cell6
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego