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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1309ChIP-seq
  • 278ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 1309DNA binding
  • 492DNA accessibility
Target of assay
  • 835histone modification
  • 834histone
  • 469transcription factor
  • 421narrow histone mark
  • 412broad histone mark
  • 105RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 313November, 2017
  • 210June, 2019
  • 189October, 2019
  • 142August, 2017
  • 133May, 2021
  • 106August, 2021
  • 97May, 2019
  • 73November, 2018
  • 72December, 2017
  • 65April, 2019
  • 65February, 2023
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 27May, 2020
  • 23February, 2021
  • 21January, 2019
  • February, 2018
  • 12October, 2017
  • 7July, 2019
  • 5September, 2017
  • 3March, 2020
  • 2November, 2020
Available data
  • 3353bam
  • 3138bigWig
  • 1801bed narrowPeak
  • 1585tsv
  • 1319fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1795Homo sapiens
Biosample type
  • 984tissue
  • 404cell line
  • 295primary cell
  • 116in vitro differentiated cells
  • 2stem cell
Organ
  • 441liver
  • 214pancreas
  • 203brain
  • 191heart
  • 183kidney
  • 151epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8embryo
  • 8skeleton
  • 1pituitary gland
Project
  • 1713AMP
  • 88T1D
Genome assembly (visualization)
  • 1616GRCh38
  • 1582hg19
Lab
  • 1527AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 63inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 48missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • February, 2018
BIOSAMPLE
ASSAY

1801 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver82202
kidney2064131
islet of Langerhans203711
coronary artery3362
left cardiac atrium401
cell line
HepG23071
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
in vitro differentiated cells
adipocyte4211
neural progenitor cell1310
hepatocyte14
pancreatic endoderm6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
stem cell
hESC2
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