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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
7
DNase-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
50
DNA binding
9
DNA accessibility
Target of assay
46
histone
46
histone modification
27
broad histone mark
19
narrow histone mark
4
RNA binding protein
4
transcription factor
Date released
36
May, 2019
13
October, 2019
5
June, 2019
4
November, 2017
1
July, 2019
Available data
83
bam
70
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
59
Homo sapiens
Biosample type
38
tissue
21
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
59
AMP
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
59
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
January, 2018
September, 2020
organ_slims!
artery
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
ascending aorta
13
1
thoracic aorta
12
1
aorta
11
primary cell
endothelial cell of umbilical vein
10
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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