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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
8
DNase-seq
7
ATAC-seq
Assay category
58
DNA binding
15
DNA accessibility
Target of assay
35
histone
35
histone modification
23
transcription factor
18
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
46
August, 2017
14
June, 2019
5
October, 2018
2
August, 2021
2
November, 2020
1
February, 2021
1
February, 2023
1
November, 2018
November, 2019
1
October, 2017
Available data
591
bam
569
bigWig
478
tsv
101
fastq
73
bed narrowPeak
27
bigBed narrowPeak
26
bed bed3+
22
tagAlign
9
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
73
Homo sapiens
Biosample type
45
in vitro differentiated cells
16
primary cell
12
tissue
Organ
liver
203
brain
191
heart
183
kidney
183
pancreas
139
epithelium
133
vasculature
129
blood vessel
92
limb
74
artery
74
connective tissue
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
13
vein
12
adipose tissue
11
spleen
8
bone element
8
skeleton
1
pituitary gland
Project
73
AMP
Genome assembly (visualization)
72
hg19
69
GRCh38
Lab
71
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
Audit category:
6
inconsistent control read length
month_released!
November, 2019
organ_slims!
liver
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
DNase-seq
ATAC-seq
in vitro differentiated cells
adipocyte
42
1
1
osteoblast
1
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
osteoblast
1
2
brain pericyte
1
tissue
omental fat pad
3
2
1
subcutaneous adipose tissue
2
1
adipose tissue
1
1
subcutaneous abdominal adipose tissue
1
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