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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
92
DNA binding
33
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
RNA binding protein
3
transcription factor
Date released
October, 2019
61
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
157
bam
143
bigWig
125
bed narrowPeak
124
bigBed narrowPeak
80
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
125
Homo sapiens
Biosample type
117
tissue
8
primary cell
Organ
379
liver
199
pancreas
175
heart
165
kidney
125
brain
122
epithelium
94
vasculature
91
blood vessel
65
connective tissue
60
musculature of body
52
artery
44
blood
44
bodily fluid
44
limb
32
eye
18
ureter
14
embryo
14
spleen
8
adipose tissue
8
bone element
8
skeleton
0
stomach
Project
125
AMP
Genome assembly (visualization)
123
GRCh38
63
hg19
Lab
125
AMP-T2D consortium
Audit category:
3
missing controlled_by
month_released!
October, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
6
14
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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