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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
4
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
68
DNA binding
7
DNA accessibility
Target of assay
94
histone modification
93
histone
broad histone mark
42
narrow histone mark
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
264
November, 2017
184
June, 2019
126
October, 2019
96
August, 2021
75
August, 2017
73
November, 2018
66
May, 2021
53
February, 2023
48
December, 2017
38
May, 2022
37
May, 2019
30
December, 2018
28
April, 2019
27
May, 2020
26
October, 2018
25
November, 2019
23
February, 2021
20
May, 2024
17
January, 2019
February, 2018
7
July, 2019
7
October, 2017
4
September, 2018
2
March, 2020
2
November, 2020
Available data
215
fastq
210
bam
200
bigWig
89
tsv
75
bed narrowPeak
40
tagAlign
27
bed bed3+
21
bigBed narrowPeak
19
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
73
Homo sapiens
Biosample type
34
tissue
31
in vitro differentiated cells
10
primary cell
Organ
34
connective tissue
26
pancreas
epithelium
11
liver
5
musculature of body
3
adipose tissue
Project
75
AMP
Genome assembly (visualization)
75
hg19
63
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2018
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
9
1
1
liver
10
skeletal muscle tissue
5
pancreas
4
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
adipocyte
30
1
primary cell
skeletal muscle myoblast
8
2
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