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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
76
ATAC-seq
53
ChIP-seq
Assay category
263
DNA accessibility
53
DNA binding
Target of assay
38
histone
38
histone modification
22
narrow histone mark
16
broad histone mark
15
transcription factor
5
RNA binding protein
Date released
313
November, 2017
210
June, 2019
189
October, 2019
142
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
73
November, 2018
December, 2017
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
316
bed narrowPeak
267
bam
257
bigWig
210
bigBed narrowPeak
192
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
123
tsv
64
xls
57
txt
24
tagAlign
2
bedpe bed3+
2
hic
1
vcf
Organism
316
Homo sapiens
Biosample type
227
tissue
50
primary cell
25
in vitro differentiated cells
14
cell line
Organ
144
kidney
41
musculature of body
33
heart
32
limb
30
brain
21
epithelium
19
liver
18
ureter
17
connective tissue
7
vasculature
6
eye
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
316
AMP
Genome assembly (visualization)
300
GRCh38
228
hg19
Lab
236
AMP-T2D consortium
64
Katalin Susztak, Upenn
14
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
month_released!
April, 2019
December, 2017
BIOSAMPLE
ASSAY
316 results
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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
tissue
kidney
13
64
heart
18
muscle of arm
17
muscle of leg
13
brain
12
+ See 34 more…
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
hepatocyte
1
3
cardiac muscle cell
1
2
+ See 17 more…
in vitro differentiated cells
neural progenitor cell
10
13
adipocyte
1
osteoblast
1
cell line
HepG2
14
See all biosamples
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