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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1286ChIP-seq
  • 214ATAC-seq
  • 130DNase-seq
  • 4FAIRE-seq
Assay category
  • 1286DNA binding
  • 348DNA accessibility
Target of assay
  • 821histone modification
  • 820histone
  • 460transcription factor
  • 414narrow histone mark
  • 405broad histone mark
  • 103RNA binding protein
  • 81recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 313November, 2017
  • 173October, 2019
  • 142August, 2017
  • 133May, 2021
  • 130June, 2019
  • 93May, 2019
  • 73November, 2018
  • 72December, 2017
  • 65February, 2023
  • 47April, 2019
  • 46September, 2018
  • 45October, 2018
  • 42August, 2021
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 27May, 2020
  • 23February, 2021
  • 21January, 2019
  • 16February, 2018
  • 12October, 2017
  • 6July, 2019
  • 5September, 2017
  • 3March, 2020
  • 2November, 2020
Available data
  • 3248bam
  • 3038bigWig
  • 1634bed narrowPeak
  • 1576tsv
  • 1358fastq
  • 938bigBed narrowPeak
  • 398tagAlign
  • 244bed broadPeak
  • 207bigBed broadPeak
  • 195bed bed3+
  • 153zippedFastqFolder
  • 99txt
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 22hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 3csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1628Homo sapiens
Biosample type
  • 831tissue
  • 396cell line
  • 273primary cell
  • 132in vitro differentiated cells
  • 2stem cell
Organ
  • 441liver
  • 214pancreas
  • 203brain
  • 191heart
  • kidney
  • 151epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1546AMP
  • 88T1D
Genome assembly (visualization)
  • 1486hg19
  • 1450GRCh38
Lab
  • 1424AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 51inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 48missing controlled_by
Audit category:
  • 54inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • kidney
BIOSAMPLE
ASSAY

1634 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver82202
islet of Langerhans203711
coronary artery3362
left cardiac atrium401
body of pancreas2644
cell line
HepG23071
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
in vitro differentiated cells
adipocyte4211
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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