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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 912ChIP-seq
  • 255ATAC-seq
  • 204DNase-seq
  • 5FAIRE-seq
Assay category
  • 912DNA binding
  • 464DNA accessibility
Target of assay
  • 770histone
  • 770histone modification
  • 391broad histone mark
  • 378narrow histone mark
  • 140transcription factor
  • 49RNA binding protein
  • 13chromatin remodeller
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 208June, 2019
  • 183October, 2019
  • 133May, 2021
  • 124August, 2017
  • 97May, 2019
  • 89August, 2021
  • 65April, 2019
  • 65February, 2023
  • 64November, 2017
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 37November, 2019
  • 30December, 2018
  • 22December, 2017
  • 22February, 2021
  • 22November, 2018
  • 21January, 2019
  • 18May, 2022
  • 16February, 2018
  • 12October, 2017
  • 7July, 2019
  • 5September, 2017
  • 3March, 2020
  • 2November, 2020
Available data
  • 2711bam
  • 2547bigWig
  • 1427tsv
  • 1376bed narrowPeak
  • 893fastq
  • 684bigBed narrowPeak
  • 312tagAlign
  • 261bed bed3+
  • 259bed broadPeak
  • 222bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 7csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1tbi
Organism
  • 1370Homo sapiens
Biosample type
  • 871tissue
  • 289primary cell
  • 118in vitro differentiated cells
  • 96cell line
  • 2stem cell
Organ
  • liver
  • 214pancreas
  • 203brain
  • 191heart
  • 183kidney
  • 151epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1288AMP
  • 88T1D
Genome assembly (visualization)
  • 1265GRCh38
  • 1161hg19
Lab
  • 1136AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 62inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 36missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

1376 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney2064131
islet of Langerhans203711
coronary artery3362
left cardiac atrium401
body of pancreas2644
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
in vitro differentiated cells
adipocyte4211
neural progenitor cell1310
pancreatic endoderm12
definitive endodermal cell6
primitive gut cell6
cell line
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
RCC 7860 HIF1a re-expression3
stem cell
hESC2
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