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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1185ChIP-seq
  • 214ATAC-seq
  • 201DNase-seq
  • 3FAIRE-seq
Assay category
  • 1185DNA binding
  • 418DNA accessibility
Target of assay
  • 724histone modification
  • 723histone
  • 456transcription factor
  • 370narrow histone mark
  • 352broad histone mark
  • 97RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 313November, 2017
  • 206June, 2019
  • 182October, 2019
  • 130May, 2021
  • 106August, 2021
  • 96May, 2019
  • 93August, 2017
  • 72December, 2017
  • 70November, 2018
  • 65April, 2019
  • 65February, 2023
  • 40May, 2024
  • 30December, 2018
  • 27May, 2020
  • 23February, 2021
  • 21January, 2019
  • 20May, 2022
  • 16February, 2018
  • 8October, 2017
  • 7July, 2019
  • 6November, 2019
  • 5October, 2018
  • 2November, 2020
Available data
  • 2703bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1184tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 245bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1603Homo sapiens
Biosample type
  • 861tissue
  • 383cell line
  • 227primary cell
  • 130in vitro differentiated cells
  • 2stem cell
Organ
  • 441liver
  • pancreas
  • 203brain
  • 191heart
  • 183kidney
  • 151epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1519AMP
  • 84T1D
Genome assembly (visualization)
  • 1444GRCh38
  • 1386hg19
Lab
  • 1347AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 49inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 15missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

1603 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver82202
kidney2064131
coronary artery3362
left cardiac atrium401
heart left ventricle2923
cell line
HepG23071
GM1287854
smooth muscle cell of the coronary artery48
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
epithelial cell of proximal tubule81
in vitro differentiated cells
adipocyte4211
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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