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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
52
DNase-seq
2
FAIRE-seq
Assay category
180
DNA binding
54
DNA accessibility
Target of assay
177
histone
177
histone modification
111
narrow histone mark
66
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
88
October, 2019
64
November, 2017
48
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
281
bam
255
bigWig
234
bed narrowPeak
158
bigBed narrowPeak
118
tagAlign
69
bed broadPeak
60
bigBed broadPeak
55
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
234
Homo sapiens
Biosample type
210
tissue
24
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
234
AMP
Genome assembly (visualization)
231
GRCh38
172
hg19
Lab
234
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
234 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 71 more…
primary cell
endothelial cell of umbilical vein
10
2
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
+ See 1 more…
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