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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 58ChIP-seq
  • 9DNase-seq
  • 8ATAC-seq
Assay category
  • 58DNA binding
  • 17DNA accessibility
Target of assay
  • 35histone
  • 35histone modification
  • 23transcription factor
  • 18narrow histone mark
  • 16broad histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 46August, 2017
  • 15June, 2019
  • 5October, 2018
  • 2August, 2021
  • 2November, 2020
  • 1February, 2021
  • 1February, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 593bam
  • 570bigWig
  • 478tsv
  • 101fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 75Homo sapiens
Biosample type
  • 45in vitro differentiated cells
  • 17primary cell
  • 13tissue
Organ
  • 441liver
  • 214pancreas
  • 203brain
  • 191heart
  • 183kidney
  • 151epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 75AMP
Genome assembly (visualization)
  • 74hg19
  • 71GRCh38
Lab
  • 73AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

75 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
in vitro differentiated cells
adipocyte4211
osteoblast1
primary cell
cardiac fibroblast33
mesenchymal stem cell6
osteoblast12
brain pericyte1
hepatic stellate cell1
tissue
omental fat pad321
subcutaneous adipose tissue21
adipose tissue11
adipose tissue(adipose white tissue)1
subcutaneous abdominal adipose tissue1
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