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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 97ChIP-seq
  • 36ATAC-seq
  • 17DNase-seq
  • 1FAIRE-seq
Assay category
  • 97DNA binding
  • 54DNA accessibility
Target of assay
  • 88histone
  • 88histone modification
  • 48narrow histone mark
  • 40broad histone mark
  • 9transcription factor
  • 8RNA binding protein
  • 1chromatin remodeller
Date released
  • 35September, 2018
  • 21October, 2019
  • 18June, 2019
  • 17August, 2017
  • 16December, 2017
  • 12February, 2023
  • 12November, 2019
  • 5September, 2017
  • 4May, 2019
  • 4November, 2017
  • 3August, 2021
  • 3May, 2021
  • 1March, 2020
Available data
  • 317bam
  • 301bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 151Homo sapiens
Biosample type
  • 106primary cell
  • 18in vitro differentiated cells
  • 15cell line
  • 12tissue
Organ
  • 441liver
  • 214pancreas
  • 203brain
  • 191heart
  • 183kidney
  • 151epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 149AMP
  • 2T1D
Genome assembly (visualization)
  • 145hg19
  • 138GRCh38
Lab
  • 151AMP-T2D consortium
Audit category:
  • 22inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

151 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic ductal cell134
pancreatic beta cell77
endothelial cell of umbilical vein1021
pancreatic acinar cell85
pancreatic alpha cell76
in vitro differentiated cells
hepatocyte14
Hepatic endoderm2
pancreatic PP cell2
cell line
EndoC_BH1131
glomerular visceral epithelial cell1
tissue
pigmented layer of retina12
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