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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
47
ATAC-seq
30
DNase-seq
Assay category
114
DNA binding
77
DNA accessibility
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
17
transcription factor
11
RNA binding protein
Date released
47
April, 2019
40
May, 2024
35
February, 2023
33
June, 2019
15
May, 2019
12
February, 2021
5
October, 2019
4
July, 2019
Available data
224
bigWig
211
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
191
Homo sapiens
Biosample type
173
tissue
12
cell line
6
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
skeleton
1
pituitary gland
Project
191
AMP
Genome assembly (visualization)
190
GRCh38
113
hg19
Lab
151
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
organ_slims!
skeleton
BIOSAMPLE
ASSAY
191 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
coronary artery
3
36
2
left cardiac atrium
40
1
heart left ventricle
29
2
3
heart
12
18
heart right ventricle
11
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
3
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