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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79DNase-seq
  • 64ATAC-seq
  • 39ChIP-seq
  • 1FAIRE-seq
Assay category
  • 144DNA accessibility
  • 39DNA binding
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 9transcription factor
  • 7recombinant protein
  • 2RNA binding protein
Date released
  • 80June, 2019
  • 64August, 2021
  • 18April, 2019
  • 16October, 2019
  • 4May, 2019
  • 1July, 2019
Available data
  • 183bed narrowPeak
  • 144bam
  • 131bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 183Homo sapiens
Biosample type
  • 153tissue
  • 22primary cell
  • 8cell line
Organ
  • 441liver
  • 214pancreas
  • 203brain
  • 191heart
  • 183kidney
  • 151epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 183AMP
Genome assembly (visualization)
  • 182GRCh38
  • 112hg19
Lab
  • 119AMP-T2D consortium
  • 64Katalin Susztak, Upenn
Audit category:
  • 12inconsistent ontology term
BIOSAMPLE
ASSAY

183 results

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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
FAIRE-seq
tissue
kidney1364201
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule18
kidney epithelial cell14
glomerular visceral epithelial cell2
kidney tubule cell2
glomerular endothelial cell1
cell line
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
RCC 7860 vector2
glomerular visceral epithelial cell1
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