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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 413ChIP-seq
  • 23ATAC-seq
  • 5DNase-seq
Assay category
  • 413DNA binding
  • 28DNA accessibility
Target of assay
  • 329transcription factor
  • 81histone modification
  • 81recombinant protein
  • 80histone
  • 56RNA binding protein
  • 51narrow histone mark
  • 29broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 249November, 2017
  • 51November, 2018
  • 50December, 2017
  • 27May, 2020
  • 20May, 2022
  • 18August, 2017
  • 17August, 2021
  • 6October, 2019
  • 2June, 2019
  • 1February, 2021
Available data
  • 681bam
  • 622bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 441Homo sapiens
Biosample type
  • 308cell line
  • 113tissue
  • 14in vitro differentiated cells
  • 6primary cell
Organ
  • 441liver
  • 214pancreas
  • 203brain
  • 191heart
  • 183kidney
  • 151epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 441AMP
Genome assembly (visualization)
  • 437hg19
  • 367GRCh38
Lab
  • 407AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

441 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG23071
tissue
liver82202
right lobe of liver711
in vitro differentiated cells
hepatocyte14
primary cell
hepatocyte31
Liver fetal (hepatocyte)1
hepatic stellate cell1
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