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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 140ChIP-seq
  • 64ATAC-seq
  • 8DNase-seq
  • 2FAIRE-seq
Assay category
  • 140DNA binding
  • 74DNA accessibility
Target of assay
  • 127histone
  • 127histone modification
  • 68broad histone mark
  • 59narrow histone mark
  • 13transcription factor
  • 8RNA binding protein
Date released
  • 49August, 2017
  • 46September, 2018
  • 40October, 2018
  • 31November, 2019
  • 18May, 2022
  • 7October, 2019
  • 5September, 2017
  • 4June, 2019
  • 4October, 2017
  • 3March, 2020
  • 3May, 2021
  • 3November, 2018
  • 1May, 2019
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 208Homo sapiens
Biosample type
  • 123tissue
  • 68primary cell
  • 21cell line
  • 2in vitro differentiated cells
Organ
  • 441liver
  • 214pancreas
  • 203brain
  • 191heart
  • 183kidney
  • 151epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 75connective tissue
  • 74artery
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 210AMP
  • 4T1D
Genome assembly (visualization)
  • 212hg19
  • 188GRCh38
Lab
  • 196AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 33missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

214 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans203711
body of pancreas2644
pancreas1321
endocrine pancreas14
primary cell
pancreatic ductal cell134
pancreatic beta cell77
pancreatic acinar cell85
pancreatic alpha cell76
pancreatic endocrine cell11
cell line
EndoC_BH1131
Panc161
in vitro differentiated cells
pancreatic PP cell2
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