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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1195ChIP-seq
  • 263ATAC-seq
  • 184DNase-seq
  • 2FAIRE-seq
Assay category
  • 1195DNA binding
  • 449DNA accessibility
Target of assay
  • 732histone modification
  • 731histone
  • 458transcription factor
  • 385broad histone mark
  • 345narrow histone mark
  • 103RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 313November, 2017
  • 181June, 2019
  • 149October, 2019
  • 124August, 2017
  • 97May, 2019
  • 87May, 2021
  • 78August, 2021
  • 71November, 2018
  • 70December, 2017
  • 65April, 2019
  • 64February, 2023
  • 46September, 2018
  • 44October, 2018
  • 40May, 2024
  • 38May, 2022
  • 36November, 2019
  • 30December, 2018
  • 27May, 2020
  • 22February, 2021
  • 21January, 2019
  • 16February, 2018
  • 12October, 2017
  • 5July, 2019
  • 5September, 2017
  • 2November, 2020
  • 1March, 2020
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 1638Homo sapiens
Biosample type
  • 901tissue
  • 404cell line
  • 236primary cell
  • 101in vitro differentiated cells
  • 2stem cell
Organ
  • 433liver
  • 200pancreas
  • 184heart
  • 177kidney
  • 162brain
  • 146epithelium
  • 133vasculature
  • 129blood vessel
  • 92limb
  • 74artery
  • 60musculature of body
  • 57connective tissue
  • 54blood
  • 54bodily fluid
  • 31eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13vein
  • 11adipose tissue
  • 8bone element
  • 8skeleton
Project
  • 1604AMP
  • 40T1D
Genome assembly (visualization)
  • 1465GRCh38
  • 1436hg19
Lab
  • 1418AMP-T2D consortium
  • 86Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 56inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 47missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1644 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver78201
kidney206411
islet of Langerhans9371
coronary artery3362
left cardiac atrium401
cell line
HepG23071
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte3813
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
in vitro differentiated cells
adipocyte361
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
primitive gut cell6
stem cell
hESC2
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