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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 821ChIP-seq
  • 250ATAC-seq
  • 187DNase-seq
  • 4FAIRE-seq
Assay category
  • 821DNA binding
  • 441DNA accessibility
Target of assay
  • 731histone modification
  • 730histone
  • 368narrow histone mark
  • 361broad histone mark
  • 90transcription factor
  • 34RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 179June, 2019
  • 142October, 2019
  • 132May, 2021
  • 125August, 2017
  • 104August, 2021
  • 85May, 2019
  • 64April, 2019
  • 63February, 2023
  • 58November, 2017
  • 46September, 2018
  • 40May, 2024
  • 38May, 2022
  • 38October, 2018
  • 27May, 2020
  • 20February, 2021
  • 19December, 2017
  • 16February, 2018
  • 15November, 2018
  • 14November, 2019
  • 12October, 2017
  • 7July, 2019
  • 6January, 2019
  • 5September, 2017
  • 3December, 2018
  • 2March, 2020
  • 2November, 2020
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1256Homo sapiens
Biosample type
  • 897tissue
  • 227primary cell
  • 101in vitro differentiated cells
  • 37cell line
Organ
  • 187brain
  • 179heart
  • 179pancreas
  • 163kidney
  • 102blood vessel
  • 102vasculature
  • 101epithelium
  • 93liver
  • 88limb
  • 71connective tissue
  • 68artery
  • 51musculature of body
  • 30eye
  • 27nerve
  • 18ureter
  • 14spleen
  • 13adipose tissue
  • 12embryo
  • 8bone element
  • 8skeleton
  • 2blood
  • 2bodily fluid
  • 1pituitary gland
  • 1vein
Project
  • 1176AMP
  • 86T1D
Genome assembly (visualization)
  • 1117GRCh38
  • 1050hg19
Lab
  • 992AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 12Bing Ren, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 32inconsistent ontology term
Audit category:
  • 36missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1262 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney2064131
liver46202
left cardiac atrium401
coronary artery2362
islet of Langerhans201811
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
pancreatic beta cell77
pancreatic acinar cell85
in vitro differentiated cells
adipocyte421
neural progenitor cell1310
pancreatic endoderm10
definitive endodermal cell4
primitive gut cell4
cell line
EndoC_BH1111
HepG212
smooth muscle cell of the coronary artery28
GM128782
iPSC derived cell line1
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