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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 634ChIP-seq
  • 47DNase-seq
  • 43ATAC-seq
  • 4FAIRE-seq
Assay category
  • 634DNA binding
  • 94DNA accessibility
Target of assay
  • 390transcription factor
  • 239histone
  • 239histone modification
  • 145narrow histone mark
  • 94broad histone mark
  • 88recombinant protein
  • 73RNA binding protein
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 255November, 2017
  • 87October, 2019
  • 60June, 2019
  • 60November, 2018
  • 55December, 2017
  • 47May, 2021
  • 35August, 2017
  • 30August, 2021
  • 27December, 2018
  • 24November, 2019
  • 15January, 2019
  • 12May, 2019
  • 8October, 2018
  • 4February, 2021
  • 3February, 2023
  • 3March, 2020
  • 2July, 2019
  • 1April, 2019
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 728Homo sapiens
Biosample type
  • 367cell line
  • 170tissue
  • 127primary cell
  • 62in vitro differentiated cells
  • 2stem cell
Organ
  • 356liver
  • 57brain
  • 55epithelium
  • 52blood
  • 52bodily fluid
  • 49pancreas
  • 31vasculature
  • 27blood vessel
  • 26kidney
  • 22connective tissue
  • 19heart
  • 12vein
  • 9musculature of body
  • 6artery
  • 5eye
  • 4limb
  • 2adipose tissue
  • 2embryo
  • 1pituitary gland
Project
  • 678AMP
  • 50T1D
Genome assembly (visualization)
  • 710hg19
  • 682GRCh38
Lab
  • 676AMP-T2D consortium
  • 46Kyle Gaulton, UCSD
  • 4Struan F.A. Grant, CHOP
  • 2Bing Ren, UCSD
Audit category:
  • 38inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 36inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

728 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG22951
GM1287852
Panc161
RCC 7860 HIF1a re-expression3
EndoC_BH12
tissue
liver401
islet of Langerhans11119
heart54
body of pancreas7
brain52
primary cell
monocyte46
skeletal muscle myoblast142
endothelial cell of umbilical vein1011
skeletal muscle satellite cell7
mesenchymal stem cell6
in vitro differentiated cells
neural progenitor cell1310
hepatocyte14
adipocyte611
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Posterior foregut2
stem cell
hESC2
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