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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 130ChIP-seq
  • 25DNase-seq
  • 15ATAC-seq
  • 3FAIRE-seq
Assay category
  • 130DNA binding
  • 43DNA accessibility
Target of assay
  • 119histone
  • 119histone modification
  • 84narrow histone mark
  • 35broad histone mark
  • 11transcription factor
  • 2RNA binding protein
Date released
  • 46May, 2021
  • 40October, 2019
  • 29June, 2019
  • 28August, 2021
  • 18August, 2017
  • 2December, 2017
  • 2July, 2019
  • 2March, 2020
  • 2November, 2018
  • 1February, 2021
  • 1February, 2023
  • 1November, 2019
  • 1October, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 173Homo sapiens
Biosample type
  • 83tissue
  • 59primary cell
  • 31in vitro differentiated cells
Organ
  • 41brain
  • 18connective tissue
  • 14pancreas
  • 8liver
  • 7heart
  • 6kidney
  • 5epithelium
  • 2adipose tissue
  • 2eye
  • 1pituitary gland
Project
  • 125AMP
  • 48T1D
Genome assembly (visualization)
  • 167GRCh38
  • 162hg19
Lab
  • 125AMP-T2D consortium
  • 46Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

173 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans111
liver41
heart4
frontal cortex21
kidney21
primary cell
monocyte46
mesenchymal stem cell6
hepatocyte3
cardiac fibroblast1
kidney glomerular epithelial cell1
in vitro differentiated cells
neural progenitor cell1310
adipocyte61
osteoblast1
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