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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
25
DNase-seq
15
ATAC-seq
3
FAIRE-seq
Assay category
130
DNA binding
43
DNA accessibility
Target of assay
119
histone
119
histone modification
84
narrow histone mark
35
broad histone mark
11
transcription factor
2
RNA binding protein
Date released
46
May, 2021
40
October, 2019
29
June, 2019
28
August, 2021
18
August, 2017
2
December, 2017
2
July, 2019
2
March, 2020
2
November, 2018
1
February, 2021
1
February, 2023
1
November, 2019
1
October, 2018
Available data
483
bam
467
bigWig
302
tsv
173
bed narrowPeak
129
fastq
116
tagAlign
68
bed bed3+
40
bigBed narrowPeak
26
bed broadPeak
24
bigBed broadPeak
8
hic
7
bedpe bed3+
6
bed bed3
5
txt
3
cool
2
csv
1
bedpe
1
tagAlign bed3+
Organism
173
Homo sapiens
Biosample type
83
tissue
59
primary cell
31
in vitro differentiated cells
Organ
41
brain
18
connective tissue
14
pancreas
8
liver
7
heart
6
kidney
5
epithelium
2
adipose tissue
2
eye
1
pituitary gland
Project
125
AMP
48
T1D
Genome assembly (visualization)
167
GRCh38
162
hg19
Lab
125
AMP-T2D consortium
46
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
173 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
11
1
liver
4
1
heart
4
frontal cortex
2
1
kidney
2
1
+ See 51 more…
primary cell
monocyte
46
mesenchymal stem cell
6
hepatocyte
3
cardiac fibroblast
1
kidney glomerular epithelial cell
1
+ See 2 more…
in vitro differentiated cells
neural progenitor cell
13
10
adipocyte
6
1
osteoblast
1
See all biosamples
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