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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 504ChIP-seq
  • 28ATAC-seq
  • 22DNase-seq
  • 1FAIRE-seq
Assay category
  • 504DNA binding
  • 51DNA accessibility
Target of assay
  • 379transcription factor
  • 120histone
  • 120histone modification
  • 88recombinant protein
  • 71RNA binding protein
  • 61narrow histone mark
  • 59broad histone mark
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 255November, 2017
  • 58November, 2018
  • 53December, 2017
  • 47October, 2019
  • 31June, 2019
  • 27December, 2018
  • 23November, 2019
  • 17August, 2017
  • 15January, 2019
  • 12May, 2019
  • 7October, 2018
  • 3February, 2021
  • 2August, 2021
  • 2February, 2023
  • 1April, 2019
  • 1March, 2020
  • 1May, 2021
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 555Homo sapiens
Biosample type
  • 367cell line
  • 87tissue
  • 68primary cell
  • 31in vitro differentiated cells
  • 2stem cell
Organ
  • 348liver
  • 52blood
  • 52bodily fluid
  • 50epithelium
  • 35pancreas
  • 31vasculature
  • 27blood vessel
  • 20kidney
  • 16brain
  • 12heart
  • 12vein
  • 9musculature of body
  • 6artery
  • 4connective tissue
  • 4limb
  • 3eye
  • 2embryo
Project
  • 553AMP
  • 2T1D
Genome assembly (visualization)
  • 548hg19
  • 515GRCh38
Lab
  • 551AMP-T2D consortium
  • 2Bing Ren, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 31inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 32inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

555 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG22951
GM1287852
Panc161
RCC 7860 HIF1a re-expression3
EndoC_BH12
tissue
liver36
islet of Langerhans19
body of pancreas7
thoracic aorta6
brain5
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1011
skeletal muscle satellite cell7
kidney epithelial cell41
astrocyte of the cerebellum21
in vitro differentiated cells
hepatocyte14
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Posterior foregut2
definitive endodermal cell2
pancreatic endoderm2
stem cell
hESC2
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