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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 691ChIP-seq
  • 235ATAC-seq
  • 162DNase-seq
  • 1FAIRE-seq
Assay category
  • 691DNA binding
  • 398DNA accessibility
Target of assay
  • 612histone modification
  • 611histone
  • 326broad histone mark
  • 284narrow histone mark
  • 79transcription factor
  • 32RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 150June, 2019
  • 107August, 2017
  • 102October, 2019
  • 86May, 2021
  • 85May, 2019
  • 76August, 2021
  • 64April, 2019
  • 62February, 2023
  • 58November, 2017
  • 46September, 2018
  • 40May, 2024
  • 38May, 2022
  • 37October, 2018
  • 27May, 2020
  • 19February, 2021
  • 17December, 2017
  • 16February, 2018
  • 13November, 2018
  • 13November, 2019
  • 12October, 2017
  • 6January, 2019
  • 5July, 2019
  • 5September, 2017
  • 3December, 2018
  • 2November, 2020
Available data
  • 2233bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • 728fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 1083Homo sapiens
Biosample type
  • 814tissue
  • 168primary cell
  • 70in vitro differentiated cells
  • 37cell line
Organ
  • 172heart
  • 165pancreas
  • 157kidney
  • 146brain
  • 102blood vessel
  • 102vasculature
  • 96epithelium
  • 88limb
  • 85liver
  • 68artery
  • 53connective tissue
  • 51musculature of body
  • 28eye
  • 27nerve
  • 18ureter
  • 14spleen
  • 12embryo
  • 11adipose tissue
  • 8bone element
  • 8skeleton
  • 2blood
  • 2bodily fluid
  • 1vein
Project
  • 1051AMP
  • 38T1D
Genome assembly (visualization)
  • 950GRCh38
  • 888hg19
Lab
  • 867AMP-T2D consortium
  • 86Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 12Bing Ren, UCSD
Audit category:
  • 25inconsistent ontology term
Audit category:
  • 35missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

1089 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney206411
liver42201
left cardiac atrium401
coronary artery2362
heart left ventricle2822
primary cell
monocyte3813
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
pancreatic beta cell77
pancreatic acinar cell85
in vitro differentiated cells
adipocyte36
pancreatic endoderm10
definitive endodermal cell4
primitive gut cell4
cardiomyocytes3
cell line
EndoC_BH1111
HepG212
smooth muscle cell of the coronary artery28
GM128782
iPSC derived cell line1
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