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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1220ChIP-seq
  • 278ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 1220DNA binding
  • 492DNA accessibility
Target of assay
  • 851histone modification
  • 850histone
  • 469transcription factor
  • 429narrow histone mark
  • 420broad histone mark
  • RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 278November, 2017
  • 206June, 2019
  • 189October, 2019
  • 135August, 2017
  • 133May, 2021
  • 105August, 2021
  • 92May, 2019
  • 68December, 2017
  • 65February, 2023
  • 62April, 2019
  • 52November, 2018
  • 46September, 2018
  • 38May, 2022
  • 36November, 2019
  • 35May, 2024
  • 34October, 2018
  • 28December, 2018
  • 27May, 2020
  • 23February, 2021
  • 16February, 2018
  • 15January, 2019
  • 12October, 2017
  • 7July, 2019
  • 5September, 2017
  • 3March, 2020
  • 2November, 2020
Available data
  • 3289bam
  • 3063bigWig
  • 1712bed narrowPeak
  • 1600tsv
  • 1269fastq
  • 949bigBed narrowPeak
  • 398tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 271bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1706Homo sapiens
Biosample type
  • 958tissue
  • 341cell line
  • 285primary cell
  • 126in vitro differentiated cells
  • 2stem cell
Organ
  • 385liver
  • 206pancreas
  • 200brain
  • 181kidney
  • 180heart
  • 143epithelium
  • 128vasculature
  • 125blood vessel
  • 92limb
  • 73artery
  • 65connective tissue
  • 60musculature of body
  • 44blood
  • 44bodily fluid
  • 32eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13vein
  • 8adipose tissue
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1624AMP
  • 88T1D
Genome assembly (visualization)
  • 1533GRCh38
  • 1499hg19
Lab
  • 1444AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 35Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 13Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 59inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 46missing controlled_by
Audit category:
  • 48inconsistent control read length
  • 6inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

1712 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver81202
kidney2064131
islet of Langerhans193711
coronary artery2362
left cardiac atrium351
cell line
HepG22551
GM1287844
EndoC_BH1121
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
pancreatic beta cell77
skeletal muscle myoblast122
in vitro differentiated cells
adipocyte3811
neural progenitor cell1310
hepatocyte12
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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