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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 905ChIP-seq
  • 278ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 905DNA binding
  • 492DNA accessibility
Target of assay
  • 851histone modification
  • 850histone
  • 469transcription factor
  • 429narrow histone mark
  • broad histone mark
  • 105RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 268November, 2017
  • 202June, 2019
  • 139October, 2019
  • 98August, 2021
  • 86August, 2017
  • 73November, 2018
  • 69May, 2021
  • 65February, 2023
  • 57December, 2017
  • 39May, 2019
  • 38May, 2022
  • 31November, 2019
  • 30December, 2018
  • 29September, 2018
  • 28April, 2019
  • 27May, 2020
  • 26October, 2018
  • 23February, 2021
  • 20May, 2024
  • 17January, 2019
  • 8February, 2018
  • 7July, 2019
  • 7October, 2017
  • 5September, 2017
  • 3March, 2020
  • 2November, 2020
Available data
  • 3014bam
  • 2742bigWig
  • 1600tsv
  • 1397bed narrowPeak
  • 1240fastq
  • 800bigBed narrowPeak
  • 286bed broadPeak
  • 269bigBed broadPeak
  • 261bed bed3+
  • 251tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1395Homo sapiens
Biosample type
  • 731tissue
  • 387cell line
  • 183primary cell
  • 95in vitro differentiated cells
  • 1stem cell
Organ
  • 412liver
  • 168kidney
  • 146pancreas
  • 142brain
  • 134heart
  • 111epithelium
  • 92vasculature
  • 88blood vessel
  • 60artery
  • 59connective tissue
  • 58limb
  • 54blood
  • 54bodily fluid
  • 44musculature of body
  • 33eye
  • 18ureter
  • 13adipose tissue
  • 11nerve
  • 10embryo
  • 10spleen
  • 8bone element
  • 8skeleton
  • 8vein
  • 1pituitary gland
Project
  • 1353AMP
  • 44T1D
Genome assembly (visualization)
  • 1245GRCh38
  • 1235hg19
Lab
  • 1208AMP-T2D consortium
  • 68Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 20Patrick T. Ellinor, Broad
  • 13Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 49inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 29missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

1397 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver72202
kidney1064131
islet of Langerhans113711
coronary artery3362
body of pancreas1544
cell line
HepG22991
GM1287854
smooth muscle cell of the coronary artery48
EndoC_BH171
Panc131
primary cell
monocyte4013
pancreatic beta cell47
pancreatic ductal cell74
CD8-positive, alpha-beta T cell10
pancreatic alpha cell46
in vitro differentiated cells
adipocyte3011
neural progenitor cell710
pancreatic endoderm8
hepatocyte7
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
stem cell
hESC1
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