Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474ChIP-seq
  • 278ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 492DNA accessibility
  • 474DNA binding
Target of assay
  • histone modification
  • 850histone
  • 469transcription factor
  • 429narrow histone mark
  • 420broad histone mark
  • 105RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 239November, 2017
  • 191June, 2019
  • 87August, 2021
  • 73November, 2018
  • 65February, 2023
  • 42December, 2017
  • 38May, 2022
  • 34August, 2017
  • 30December, 2018
  • 27November, 2019
  • 23February, 2021
  • 22October, 2019
  • 17May, 2021
  • 15October, 2018
  • 14January, 2019
  • 14September, 2018
  • 7July, 2019
  • 6October, 2017
  • 5April, 2019
  • 5May, 2019
  • 5May, 2024
  • 5September, 2017
  • 2November, 2020
Available data
  • 2607bam
  • 2300bigWig
  • 1600tsv
  • 1128fastq
  • 966bed narrowPeak
  • 651bigBed narrowPeak
  • 257bed broadPeak
  • 255bigBed broadPeak
  • 248bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 77tagAlign
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 966Homo sapiens
Biosample type
  • 464tissue
  • 369cell line
  • 79primary cell
  • 54in vitro differentiated cells
Organ
  • 360liver
  • 153kidney
  • 94heart
  • 87pancreas
  • 67vasculature
  • 64blood vessel
  • 63epithelium
  • 54artery
  • 53blood
  • 53bodily fluid
  • 44limb
  • 40connective tissue
  • 36brain
  • 33musculature of body
  • 32eye
  • 18ureter
  • 11adipose tissue
  • 8bone element
  • 8skeleton
  • 8spleen
  • 3embryo
  • 3nerve
  • 3vein
Project
  • 966AMP
Genome assembly (visualization)
  • 845GRCh38
  • 835hg19
Lab
  • 844AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 18Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 30inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 11missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

966 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney64131
liver37202
islet of Langerhans13711
coronary artery1362
heart18
cell line
HepG22911
GM1287853
smooth muscle cell of the coronary artery48
RCC 7860 HIF1a re-expression3
EndoC_BH111
primary cell
monocyte13
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
cardiac fibroblast13
in vitro differentiated cells
adipocyte1711
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiomyocytes3
pancreatic endoderm3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego