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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 896ChIP-seq
  • 278ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 896DNA binding
  • 492DNA accessibility
Target of assay
  • 851histone modification
  • 850histone
  • 469transcription factor
  • narrow histone mark
  • 420broad histone mark
  • 105RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 284November, 2017
  • 199June, 2019
  • 95August, 2021
  • 92August, 2017
  • 81May, 2021
  • 73November, 2018
  • 72October, 2019
  • 65February, 2023
  • 63May, 2019
  • 57December, 2017
  • 42April, 2019
  • 38May, 2022
  • 34October, 2018
  • 33November, 2019
  • 31September, 2018
  • 30December, 2018
  • 25May, 2024
  • 23February, 2021
  • 18January, 2019
  • 11October, 2017
  • 8February, 2018
  • 7July, 2019
  • 5September, 2017
  • 2November, 2020
Available data
  • 2987bam
  • 2729bigWig
  • 1600tsv
  • 1388bed narrowPeak
  • 1248fastq
  • 893bigBed narrowPeak
  • 293bed broadPeak
  • 271bigBed broadPeak
  • 260bed bed3+
  • 224tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 1384Homo sapiens
Biosample type
  • 718tissue
  • 386cell line
  • 191primary cell
  • 92in vitro differentiated cells
  • 1stem cell
Organ
  • 390liver
  • 168kidney
  • 155pancreas
  • 151heart
  • 108vasculature
  • 105blood vessel
  • 103epithelium
  • 97brain
  • 78limb
  • 68artery
  • 57connective tissue
  • 53blood
  • 53bodily fluid
  • 49musculature of body
  • 32eye
  • 19nerve
  • 18ureter
  • 12spleen
  • 11adipose tissue
  • 8bone element
  • 8skeleton
  • 8vein
  • 7embryo
Project
  • 1344AMP
  • 44T1D
Genome assembly (visualization)
  • 1234GRCh38
  • 1200hg19
Lab
  • 1181AMP-T2D consortium
  • 82Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 25Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 12Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 44inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 30missing controlled_by
Audit category:
  • 39inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

1388 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney1064131
liver48202
islet of Langerhans103711
coronary artery1362
body of pancreas2044
cell line
HepG22991
GM1287853
smooth muscle cell of the coronary artery48
EndoC_BH171
Panc131
primary cell
monocyte4413
CD8-positive, alpha-beta T cell20
pancreatic beta cell37
pancreatic ductal cell64
skeletal muscle myoblast82
in vitro differentiated cells
adipocyte3011
neural progenitor cell610
hepatocyte9
pancreatic endoderm7
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
stem cell
hESC1
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