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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 856ChIP-seq
  • 278ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 856DNA binding
  • 492DNA accessibility
Target of assay
  • 851histone modification
  • 850histone
  • transcription factor
  • 429narrow histone mark
  • 420broad histone mark
  • 105RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 206June, 2019
  • 182October, 2019
  • 129May, 2021
  • 118August, 2017
  • 95August, 2021
  • 92May, 2019
  • 77November, 2017
  • 65February, 2023
  • 60April, 2019
  • 46September, 2018
  • 38May, 2022
  • 36November, 2019
  • 35May, 2024
  • 30December, 2017
  • 30October, 2018
  • 27May, 2020
  • 18February, 2021
  • 16February, 2018
  • 12October, 2017
  • 10November, 2018
  • 7January, 2019
  • 7July, 2019
  • 5September, 2017
  • 3March, 2020
  • 2December, 2018
  • 2November, 2020
Available data
  • 2907bam
  • 2673bigWig
  • 1601tsv
  • 1348bed narrowPeak
  • 904fastq
  • 637bigBed narrowPeak
  • 389tagAlign
  • 273bed broadPeak
  • 255bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1tbi
  • 1vcf
Organism
  • 1342Homo sapiens
Biosample type
  • 909tissue
  • 285primary cell
  • 100in vitro differentiated cells
  • 52cell line
  • 2stem cell
Organ
  • 201pancreas
  • 200brain
  • 174heart
  • 174kidney
  • 142epithelium
  • 124vasculature
  • 121blood vessel
  • 112liver
  • 92limb
  • 69artery
  • 60musculature of body
  • 52connective tissue
  • 32eye
  • 27nerve
  • 18ureter
  • 13vein
  • 11embryo
  • 8adipose tissue
  • 8bone element
  • 8skeleton
  • 8spleen
  • 3blood
  • 3bodily fluid
  • 1pituitary gland
Project
  • 1260AMP
  • 88T1D
Genome assembly (visualization)
  • 1207GRCh38
  • 1138hg19
Lab
  • 1090AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 35Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 4Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
Audit category:
  • 49inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 37missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

1348 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney2064131
liver45202
islet of Langerhans193711
coronary artery2362
left cardiac atrium351
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
pancreatic beta cell77
skeletal muscle myoblast122
in vitro differentiated cells
adipocyte2511
neural progenitor cell1310
hepatocyte12
pancreatic endoderm9
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cell line
HepG2191
EndoC_BH1121
smooth muscle cell of the coronary artery8
Panc161
GM128783
stem cell
hESC2
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