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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 429ChIP-seq
Assay category
  • 429DNA binding
Target of assay
  • 851histone modification
  • 850histone
  • 469transcription factor
  • 429narrow histone mark
  • 420broad histone mark
  • 105RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 117October, 2019
  • 52May, 2021
  • 50August, 2017
  • 34May, 2019
  • 29November, 2017
  • 27May, 2020
  • 23April, 2019
  • 15December, 2017
  • 15May, 2024
  • 15September, 2018
  • 11August, 2021
  • 11June, 2019
  • 11October, 2018
  • 8February, 2018
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 1October, 2017
Available data
  • 440bigWig
  • 429bed narrowPeak
  • 405bam
  • 174tagAlign
  • 149bigBed narrowPeak
  • 110fastq
  • 29bed broadPeak
  • 14bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 427Homo sapiens
Biosample type
  • 266tissue
  • 104primary cell
  • 40in vitro differentiated cells
  • 18cell line
  • 1stem cell
Organ
  • 106brain
  • 59pancreas
  • 51liver
  • 48epithelium
  • 40heart
  • 25vasculature
  • 24blood vessel
  • 18connective tissue
  • 15kidney
  • 14limb
  • 11musculature of body
  • 8nerve
  • 7embryo
  • 6artery
  • 5vein
  • 2adipose tissue
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1eye
  • 1pituitary gland
Project
  • 385AMP
  • 44T1D
Genome assembly (visualization)
  • 398GRCh38
  • 398hg19
Lab
  • 362AMP-T2D consortium
  • 50Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 18missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

429 results

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Clear Filters
ChIP-seq
tissue
liver34
left cardiac atrium15
islet of Langerhans10
kidney10
heart left ventricle9
primary cell
monocyte40
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
skeletal muscle myoblast6
endothelial cell of umbilical vein5
in vitro differentiated cells
adipocyte12
neural progenitor cell7
hepatocyte5
pancreatic endoderm5
Hepatic endoderm2
cell line
HepG28
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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