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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 469ChIP-seq
Assay category
  • 469DNA binding
Target of assay
  • 851histone modification
  • 850histone
  • 469transcription factor
  • 429narrow histone mark
  • 420broad histone mark
  • 105RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 236November, 2017
  • 63November, 2018
  • 42December, 2017
  • 28December, 2018
  • 24August, 2017
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 5April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 4May, 2021
  • 1November, 2019
Available data
  • 496bigWig
  • 485bam
  • 469bed narrowPeak
  • 454fastq
  • 405bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 469Homo sapiens
Biosample type
  • 352cell line
  • 75tissue
  • 32in vitro differentiated cells
  • 10primary cell
Organ
  • 329liver
  • 51blood
  • 51bodily fluid
  • 23connective tissue
  • 17heart
  • 13pancreas
  • 9epithelium
  • 9kidney
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5adipose tissue
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 469AMP
Genome assembly (visualization)
  • 460hg19
  • 425GRCh38
Lab
  • 453AMP-T2D consortium
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 11missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

469 results

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Clear Filters
ChIP-seq
cell line
HepG2288
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
body of pancreas9
spleen6
heart left ventricle5
left cardiac atrium5
in vitro differentiated cells
adipocyte17
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
definitive endodermal cell2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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