Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
98
total RNA-seq
38
ATAC-seq
1
Hi-C
Assay category
171
DNA binding
98
Transcription
38
DNA accessibility
1
3D chromatin structure
Target of assay
152
histone
152
histone modification
85
broad histone mark
67
narrow histone mark
16
transcription factor
6
RNA binding protein
3
control
Date released
175
May, 2021
45
May, 2020
40
May, 2024
20
May, 2022
16
August, 2021
7
August, 2020
3
September, 2020
1
March, 2019
1
October, 2017
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
308
Homo sapiens
Biosample type
225
primary cell
62
tissue
14
cell line
7
in vitro differentiated cells
Organ
40
heart
34
liver
12
pancreas
10
epithelium
2
connective tissue
Project
180
T1D
118
AMP
10
HPAP
Genome assembly (visualization)
258
hg19
231
GRCh38
Lab
AMP-T2D consortium
220
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
files.file_type!
bigBed broadPeak
txt
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
308 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
+ See 22 more…
tissue
left cardiac atrium
40
liver
20
islet of Langerhans
1
1
cell line
HepG2
14
in vitro differentiated cells
embryonic stem cell
5
adipocyte
1
osteoblast
1
See all biosamples
Download