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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
34
single cell RNA-seq
27
snATAC-seq
23
ATAC-seq
6
WGBS
1
Hi-C
Assay category
132
Transcription
50
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Date released
76
February, 2023
45
February, 2021
41
September, 2020
24
May, 2022
August, 2020
2
March, 2019
1
October, 2017
Available data
303
bigWig
210
bed narrowPeak
205
bam
188
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
9
txt
6
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
189
Homo sapiens
Biosample type
162
primary cell
27
tissue
Organ
89
pancreas
62
epithelium
Project
162
HPAP
27
AMP
Genome assembly (visualization)
20
hg19
4
GRCh38
Lab
AMP-T2D consortium
162
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
lab.title!
AMP-T2D consortium
month_released!
August, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
189 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
2
6
exocrine cell
39
pancreatic beta cell
11
1
tissue
islet of Langerhans
6
20
1
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