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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
WGBS
2
ATAC-seq
2
total RNA-seq
1
Hi-C
1
pCHi-C
Assay category
6
DNA methylation
2
DNA accessibility
2
Transcription
1
3D chromatin structure
Date released
6
February, 2021
3
March, 2020
1
August, 2021
1
February, 2020
1
March, 2019
Available data
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
12
Homo sapiens
Biosample type
6
primary cell
5
tissue
1
cell line
Organ
98
heart
14
brain
12
kidney
12
liver
12
pancreas
10
blood vessel
10
epithelium
10
vasculature
5
eye
4
artery
4
connective tissue
3
adipose tissue
3
limb
3
musculature of body
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
spleen
1
stomach
1
thymus
1
urinary bladder
Project
6
AMP
6
HPAP
Genome assembly (visualization)
3
hg19
Lab
6
Klaus Kaestner, Upenn
4
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bam
organ_slims!
spleen
BIOSAMPLE
ASSAY
12 results
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Clear Filters
WGBS
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
6
tissue
islet of Langerhans
1
1
1
body of pancreas
1
pancreas
1
cell line
EndoC_BH1
1
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