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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
Hi-C
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
4
DNA accessibility
1
3D chromatin structure
Date released
89
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
1
March, 2019
1
October, 2022
Available data
2519
bam
2213
bigWig
1600
tsv
1047
fastq
879
bed narrowPeak
570
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
248
bed bed3+
161
txt
153
zippedFastqFolder
77
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
161
Homo sapiens
Biosample type
158
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
7
pancreas
4
skeleton
1
musculature of body
Project
162
AMP
Genome assembly (visualization)
5
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
6
audit script error
organ_slims!
bone marrow
target.investigated_as!
histone
recombinant protein
BIOSAMPLE
ASSAY
162 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
1
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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