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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
Hi-C
4
WGBS
2
RRBS
Assay category
8
3D chromatin structure
6
DNA methylation
Date released
4
November, 2018
3
October, 2022
2
July, 2019
2
March, 2020
2
November, 2019
1
August, 2021
Available data
709
bam
638
bigWig
471
fastq
417
tsv
227
bed narrowPeak
104
bigBed narrowPeak
80
zippedFastqFolder
31
bed bed3+
25
bed broadPeak
19
tagAlign
11
bigBed broadPeak
9
hic
8
bedpe bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
1
tar
Organism
14
Homo sapiens
Biosample type
9
tissue
4
primary cell
1
cell line
Organ
13
pancreas
11
epithelium
11
heart
6
musculature of body
5
liver
4
connective tissue
4
kidney
4
vasculature
3
adipose tissue
3
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
11
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
4
GRCh38
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
14 results
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Clear Filters
Hi-C
WGBS
RRBS
tissue
pancreas
1
2
1
islet of Langerhans
2
1
body of pancreas
2
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
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