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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
7
Hi-C
4
WGBS
2
RRBS
Assay category
19
DNA binding
7
3D chromatin structure
6
DNA methylation
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
3
control
1
transcription factor
Date released
16
August, 2017
4
November, 2018
3
May, 2021
3
October, 2022
2
July, 2019
2
November, 2019
1
August, 2021
1
March, 2020
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
25
Homo sapiens
Biosample type
25
tissue
3
in vitro differentiated cells
3
primary cell
1
cell line
Organ
119
brain
91
liver
32
pancreas
26
connective tissue
21
musculature of body
18
epithelium
17
heart
11
adipose tissue
10
vasculature
9
blood vessel
6
artery
4
kidney
2
spleen
1
eye
1
limb
1
pericardium
1
pituitary gland
1
vein
Project
29
AMP
3
HPAP
Genome assembly (visualization)
22
hg19
12
GRCh38
Lab
28
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
Hi-C
WGBS
RRBS
tissue
islet of Langerhans
9
2
1
pancreas
7
1
2
1
body of pancreas
2
in vitro differentiated cells
pancreatic PP cell
3
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
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